My ScientistOverview

Describe. Build. Release.

Work with your Scientist

Optional direction

Read the prompt

Use this chat as an ongoing entry point to My Scientist. Read this Scientist checkout’s AGENTS.md, STARTER.md and REPORTING.md, then its explicit instance profile and project relationships. Consult only connected, unpaused organs and relevant project-owned sources. Do not assume optional organs, an agent harness or remote access are installed. Help connect existing projects using their canonical repository identities; ask about purpose, visibility and needed capabilities before changing setup. Keep missing evidence distinct from unconfigured organs.

When I give no particular direction, provide a concise overview of the organism’s work across connected organs over the last 24 hours, plus its current position: significant progress, blockers, decisions needing my attention and useful next steps. Check evidence freshness and coverage, linking to the owning boards rather than reproducing every queue.

For a summary over a given time period, use that period instead of the last 24 hours. State the start, end and timezone. Check dated records in every connected organ, distinguish completed outcomes from work still in progress and decisions awaiting me, and link the evidence. Deduplicate work spanning organs. A dashboard refresh is not a completed event; current snapshots alone cannot establish a historical summary. Report coverage gaps separately from verified inactivity, and separate events within the period from older blockers that remain open. Keep the summary high level. Determine overnight or recent activity on demand from those owner records and, when needed, workflow runs covering the requested interval. Do not rely on a fixed latest-run digest from Brain or create scheduled collection for this review. Account for pagination and unavailable history; distinguish failed, blocked, in-progress and absent runs without treating missing access as inactivity.

When I supply a question, idea or task, make that the main focus. Help me clarify what I want to achieve and identify the appropriate organ, project and workflow. Explain the routing briefly and continue through it in this conversation where possible. Do not repeat the organism-wide review on every follow-up.

Help me work through requests that span several organs. Identify dependencies, establish an appropriate order and keep decisions connected across the work. Respect each organ’s ownership of its records, judgments and execution procedures.

When I ask about the organism itself, help me examine its architecture, workflows, missing capabilities or unnecessary complexity. Ground recommendations in the existing system and discuss concrete options and tradeoffs before proposing changes.

Carry clearly authorized work through the appropriate skills, retaining decisions and approvals already given in this conversation. Ask when a missing decision materially changes the next step. Preserve applicable development, compute, community-reply, merge and release approval requirements.

Keep authoritative task state, scientific records and execution in their owning repositories. After taking action, report the outcome, where any changes were recorded and what remains unresolved. Stop at the session deliverable without scheduling background follow-up.

Work on GitHub:
- My Scientist repository: https://github.com/ExampleResearch/MyScientist

Last updated unavailableUpdate unavailable

Projects

SpectraScientific investigation

Software: SpectralAnalysis
Workspaces: spectra_workspace Available to add
Examples and working scripts for this project.
Setup promptHelp me add workspaces to project "Spectra" (stable project ID: spectra). Suggested name: "spectra_workspace"; this is only a naming hint. Read this Scientist's instructions, instance profile, project relationships and canonical Mind repository map. Inspect existing project-owned sources and any partial setup first; reuse them and preserve user records. Ask for missing purpose, location, ownership or visibility choices. Do not infer identity or access from names. Propose the smallest useful setup through the existing development workflow, including validation and how to resume it. Obtain approval before creating repositories, changing access, publishing or running science. Keep capability workspaces available until setup is validated. Then replace its available entry with an explicit connected resource using the canonical repository identity, and validate the Scientist configuration offline. Configure an owning organ separately if needed; a resource link is not organ activation or evidence of quality.
Tutorials: HowToSpectra Available to add
Step-by-step teaching material.
Setup promptHelp me add tutorials to project "Spectra" (stable project ID: spectra). Suggested name: "HowToSpectra"; this is only a naming hint. Read this Scientist's instructions, instance profile, project relationships and canonical Mind repository map. Inspect existing project-owned sources and any partial setup first; reuse them and preserve user records. Ask for missing purpose, location, ownership or visibility choices. Do not infer identity or access from names. Propose the smallest useful setup through the existing development workflow, including validation and how to resume it. Obtain approval before creating repositories, changing access, publishing or running science. Keep capability tutorials available until setup is validated. Then replace its available entry with an explicit connected resource using the canonical repository identity, and validate the Scientist configuration offline. Configure an owning organ separately if needed; a resource link is not organ activation or evidence of quality.
Documentation: Spectra guide Available to add
Reference and usage guides.
Setup promptHelp me add documentation to project "Spectra" (stable project ID: spectra). Suggested name: "Spectra guide"; this is only a naming hint. Read this Scientist's instructions, instance profile, project relationships and canonical Mind repository map. Inspect existing project-owned sources and any partial setup first; reuse them and preserve user records. Ask for missing purpose, location, ownership or visibility choices. Do not infer identity or access from names. Propose the smallest useful setup through the existing development workflow, including validation and how to resume it. Obtain approval before creating repositories, changing access, publishing or running science. Keep capability documentation available until setup is validated. Then replace its available entry with an explicit connected resource using the canonical repository identity, and validate the Scientist configuration offline. Configure an owning organ separately if needed; a resource link is not organ activation or evidence of quality.
Assistants: spectra_assistant Available to add
A project-specific research assistant.
Setup promptHelp me add assistants to project "Spectra" (stable project ID: spectra). Suggested name: "spectra_assistant"; this is only a naming hint. Read this Scientist's instructions, instance profile, project relationships and canonical Mind repository map. Inspect existing project-owned sources and any partial setup first; reuse them and preserve user records. Ask for missing purpose, location, ownership or visibility choices. Do not infer identity or access from names. Propose the smallest useful setup through the existing development workflow, including validation and how to resume it. Obtain approval before creating repositories, changing access, publishing or running science. Keep capability assistants available until setup is validated. Then replace its available entry with an explicit connected resource using the canonical repository identity, and validate the Scientist configuration offline. Configure an owning organ separately if needed; a resource link is not organ activation or evidence of quality.
Profiling: spectra_profiling Available to add
Measure runtime and resource use.
Setup promptHelp me add profiling to project "Spectra" (stable project ID: spectra). Suggested name: "spectra_profiling"; this is only a naming hint. Read this Scientist's instructions, instance profile, project relationships and canonical Mind repository map. Inspect existing project-owned sources and any partial setup first; reuse them and preserve user records. Ask for missing purpose, location, ownership or visibility choices. Do not infer identity or access from names. Propose the smallest useful setup through the existing development workflow, including validation and how to resume it. Obtain approval before creating repositories, changing access, publishing or running science. Keep capability profiling available until setup is validated. Then replace its available entry with an explicit connected resource using the canonical repository identity, and validate the Scientist configuration offline. Configure an owning organ separately if needed; a resource link is not organ activation or evidence of quality.
Inference: spectra_inference Available to add
Compare inference methods and results.
Setup promptHelp me add inference to project "Spectra" (stable project ID: spectra). Suggested name: "spectra_inference"; this is only a naming hint. Read this Scientist's instructions, instance profile, project relationships and canonical Mind repository map. Inspect existing project-owned sources and any partial setup first; reuse them and preserve user records. Ask for missing purpose, location, ownership or visibility choices. Do not infer identity or access from names. Propose the smallest useful setup through the existing development workflow, including validation and how to resume it. Obtain approval before creating repositories, changing access, publishing or running science. Keep capability inference available until setup is validated. Then replace its available entry with an explicit connected resource using the canonical repository identity, and validate the Scientist configuration offline. Configure an owning organ separately if needed; a resource link is not organ activation or evidence of quality.
Visualization: spectra_visualization Available to add
Review figures and visualization outputs.
Setup promptHelp me add visualization to project "Spectra" (stable project ID: spectra). Suggested name: "spectra_visualization"; this is only a naming hint. Read this Scientist's instructions, instance profile, project relationships and canonical Mind repository map. Inspect existing project-owned sources and any partial setup first; reuse them and preserve user records. Ask for missing purpose, location, ownership or visibility choices. Do not infer identity or access from names. Propose the smallest useful setup through the existing development workflow, including validation and how to resume it. Obtain approval before creating repositories, changing access, publishing or running science. Keep capability visualization available until setup is validated. Then replace its available entry with an explicit connected resource using the canonical repository identity, and validate the Scientist configuration offline. Configure an owning organ separately if needed; a resource link is not organ activation or evidence of quality.
Workspace tests: spectra_workspace_test Available to add
Regression and smoke-test workspaces.
Setup promptHelp me add workspace tests to project "Spectra" (stable project ID: spectra). Suggested name: "spectra_workspace_test"; this is only a naming hint. Read this Scientist's instructions, instance profile, project relationships and canonical Mind repository map. Inspect existing project-owned sources and any partial setup first; reuse them and preserve user records. Ask for missing purpose, location, ownership or visibility choices. Do not infer identity or access from names. Propose the smallest useful setup through the existing development workflow, including validation and how to resume it. Obtain approval before creating repositories, changing access, publishing or running science. Keep capability tests available until setup is validated. Then replace its available entry with an explicit connected resource using the canonical repository identity, and validate the Scientist configuration offline. Configure an owning organ separately if needed; a resource link is not organ activation or evidence of quality.

Dashboards

No organs connected. Add a connection when your project needs it.

Available organs

Brain · Available to add

Orchestration

Help me add Brain (Orchestration) to this Scientist. Read my existing profile, canonical map and Mind task. Confirm the purpose, repository identity and public board location; preview organ_lifecycle.py setup before applying. Keep it setup incomplete until connect_organ.py validates its published feed.

Mind · Available to add

Planning

Help me add Mind (Planning) to this Scientist. Read my existing profile, canonical map and Mind task. Confirm the purpose, repository identity and public board location; preview organ_lifecycle.py setup before applying. Keep it setup incomplete until connect_organ.py validates its published feed.

Cortex · Available to add

Science

Help me add Cortex (Science) to this Scientist. Read my existing profile, canonical map and Mind task. Confirm the purpose, repository identity and public board location; preview organ_lifecycle.py setup before applying. Keep it setup incomplete until connect_organ.py validates its published feed.

Memory · Available to add

Knowledge

Help me add Memory (Knowledge) to this Scientist. Read my existing profile, canonical map and Mind task. Confirm the purpose, repository identity and public board location; preview organ_lifecycle.py setup before applying. Keep it setup incomplete until connect_organ.py validates its published feed.

Eyes · Available to add

Visualization

Help me add Eyes (Visualization) to this Scientist. Read my existing profile, canonical map and Mind task. Confirm the purpose, repository identity and public board location; preview organ_lifecycle.py setup before applying. Keep it setup incomplete until connect_organ.py validates its published feed.

Ears · Available to add

Community

Help me add Ears (Community) to this Scientist. Read my existing profile, canonical map and Mind task. Confirm the purpose, repository identity and public board location; preview organ_lifecycle.py setup before applying. Keep it setup incomplete until connect_organ.py validates its published feed.

Heart · Available to add

Tests

Help me add Heart (Tests) to this Scientist. Read my existing profile, canonical map and Mind task. Confirm the purpose, repository identity and public board location; preview organ_lifecycle.py setup before applying. Keep it setup incomplete until connect_organ.py validates its published feed.

Hands · Available to add

Releases

Help me add Hands (Releases) to this Scientist. Read my existing profile, canonical map and Mind task. Confirm the purpose, repository identity and public board location; preview organ_lifecycle.py setup before applying. Keep it setup incomplete until connect_organ.py validates its published feed.

Pulse · Available to add

Profiling

Help me add Pulse (Profiling) to this Scientist. Read my existing profile, canonical map and Mind task. Confirm the purpose, repository identity and public board location; preview organ_lifecycle.py setup before applying. Keep it setup incomplete until connect_organ.py validates its published feed.

Insight · Available to add

Inference

Help me add Insight (Inference) to this Scientist. Read my existing profile, canonical map and Mind task. Confirm the purpose, repository identity and public board location; preview organ_lifecycle.py setup before applying. Keep it setup incomplete until connect_organ.py validates its published feed.

DNA · Available to add

Environments

Help me add DNA (Environments) to this Scientist. Read my existing profile, canonical map and Mind task. Confirm the purpose, repository identity and public board location; preview organ_lifecycle.py setup before applying. Keep it setup incomplete until connect_organ.py validates its published feed.

Nerves · Available to add

Configuration

Help me add Nerves (Configuration) to this Scientist. Read my existing profile, canonical map and Mind task. Confirm the purpose, repository identity and public board location; preview organ_lifecycle.py setup before applying. Keep it setup incomplete until connect_organ.py validates its published feed.

Broca · Available to add

Assistants

Help me add Broca (Assistants) to this Scientist. Read my existing profile, canonical map and Mind task. Confirm the purpose, repository identity and public board location; preview organ_lifecycle.py setup before applying. Keep it setup incomplete until connect_organ.py validates its published feed.

Gut · Available to add

Cleanup

Help me add Gut (Cleanup) to this Scientist. Read my existing profile, canonical map and Mind task. Confirm the purpose, repository identity and public board location; preview organ_lifecycle.py setup before applying. Keep it setup incomplete until connect_organ.py validates its published feed.