Reason. Plan. Decide.
intake — File classified prompts; never start development
batch — Propose a review-budgeted batch; collect its results
community — Triage community threads; human-approved replies and development handoffs
feature — Select, size and plan features
bug — Classify regressions and plan repairs
refactor — Plan behavior-preserving restructuring
workspace — Plan or survey examples and tutorials
eyes — Survey figures and route accepted critiques
profiling — Plan campaigns; ingest results; triage profiling drift
cortex — Pull science runs and record human checkins
hygiene — Prioritize upkeep and delegate fixes
clone — Plan assistant births or synchronize generic files
build — Consult vitals and coordinate Hands execution
release — Coordinate release rehearsal, validation and nightly execution
health — Assess health and route repairs
vitals — Read authoritative Heart readiness
review — Prepare independent CLEAN/FINDINGS/BLOCKED branch review
memory — Recall cited scientific and task history
samplers — Inspect sampler coverage, tiers and benchmarks
sizing — Estimate task difficulty
brain — Run a named PyAutoBrain conductor or faculty directly through bin/pyauto-brain.
ci-speedup — Find the slowest CI parts on the PyAutoHeart board (smoke scripts, unit tests, workflow gates), and drive speed-ups through the dev flow.
docs — Start PyAutoLabs documentation, tutorial, notebook, example, or narrative-prose work through the Brain development workflow with the docs wo
feedback — Draft user-reviewed feedback on using PyAutoLabs software and assistants (goals, successes, friction, evidence).
issue-cleanup — Reconcile the PyAuto GitHub issue trackers — audit open issues against Mind completion records and merged PRs, bucket them, close only what
prm — Judge every CI run and matrix leg, merge human-authorized PRs when green, then close the issue and Mind task and clean the worktree.
repo-cleanup — Periodic hygiene sweep across PyAuto repos and worktrees — audit stale feature branches, tracking refs, stashes, and dirty checkouts, then e
research — Start exploratory scientific, algorithmic, architectural, or prior-art investigation through the PyAutoBrain development workflow with the r
route — Infer the appropriate PyAutoBrain command or development work type from a free-form PyAutoLabs request.
sampler-pipeline — Trial a new non-linear sampler via ingest → prototype → profile → promote, up to a full PyAutoFit implementation.
ship-library — Validate and ship PyAuto library changes to pending-release PRs, including downstream impact and Mind state.
ship-workspace — Validate and ship PyAuto workspace or tutorial changes behind the library-first gate, then update Mind state.
start-dev — Plan and register PyAutoLabs development work, then route it to a library or workspace worktree.
start-dev-for-user — Start a PyAutoLabs development task for another contributor, including plan, issue, branch, and handoff preparation without claiming the loc
start-library — Create or resume claimed PyAuto library worktrees after start-dev and prepare them for source edits.
start-workspace — Set up PyAutoLabs workspace or tutorial development — attach or create workspace worktrees, inspect upstream library API changes, and regist
update-issue — Post a progress update to a GitHub issue from the current CLI session — commits, summary, and remaining work.
Investigate slow tests / CI
Review code quality
Reconcile issue trackers
Clean up branches and worktrees
28 adjacent documentation boundaries in 19 files across 3/5 repos; 0 parse errors
1 script(s) across 5 repo(s) with LaTeX damaged by string escapes: 2 warned, 1 silent (0 file(s) have ONLY silent damage, which a warning-on
60 folder-list defects (60 dead references, 0 undocumented folders) in 24 files across 3/5 repos; 251 unresolvable refs skipped
1 smoke-listed script uses a gated API with no optional-dependency skip guard (nufftax:1) — fails the CI matrices that omit the extras
38 capped/pinned specifiers across 10 pyproject.toml (20/20 code repos present)
33 api .rst files, 82 currentmodule directives across 4 repos with docs/api (20/20 code repos present)
25 library config keys absent downstream (review/mirror): autofit_workspace:5 autogalaxy_workspace:19 autolens_workspace:1